2021

  • "ヘムタンパク質の機能発現メカニズムの解明に向けたデータベースの整備と機械学習を用いた解析; Database development and machine learning analysis to clarify the functional mechanism of heme proteins," 近藤 寛子, フロンティア (理論化学会誌), 第3巻1号, 2021

2020

  • "PyDISH: database and analysis tools for heme porphyrin distortion in heme proteins," Hiroko X. Kondo*, Yusuke Kanematsu*, Gen Masumoto, and Yu Takano*, Database 2020, baaa066, 2020
    DOI: 10.1093/database/baaa066
  • "Computational study of distortion effect of Fe-porphyrin found as a biological active site," Yu Takano*, Hiroko X. Kondo, Yusuke Kanematsu, and Yasuhiro Imada, Japanese Journal of Applied Physics 59, 010502, 2020

2019

  • "Effects of a remote mutation from the contact paratope on the structure of CDR-H3 in the anti-HIV neutralizing antibody PG16," Hiroko X. Kondo*, Ryo Kiribayashi, Daisuke Kuroda*, Jiro Kohda, Akimitsu Kugimiya, Yasuhisa Nakano, Kouhei Tsumoto, and Yu Takano*, Scientific Reports 9:19840, 2019
  • "電位依存性カリウムチャネルKv1.2の変異体における不活性化の分子機構の解析," 近藤 寛子, 吉田 紀生, 城田 松之, アンサンブル (分子シミュレーション学会誌) 21, 283-289, 2019
  • "Hydrogen bond donors and acceptors are generally depolarized in a-helices as revealed by a molecular tailoring approach," Hiroko X. Kondo*, Ayumi Kusaka, Colin K. Kitakawa, Jinta Onari, Shusuke Yamanaka, Haruki Nakamura, and Yu Takano*, Journal of Computational Chemistry 40(23), 2043-2052, 2019
    DOI: 10.1002/jcc.25859

2018

  • "Molecular mechanism of depolarization-dependent inactivation in W366F mutant of Kv1.2," Hiroko X. Kondo, Norio Yoshida, Matsuyuki Shirota, and Kengo Kinoshita*, The Journal of Physical Chemistry B 122(48), 10825-10833, 2018
    DOI: 10.1021/acs.jpcb.8b09446
  • "Statistical and quantum-chemical analysis of the effect of heme porphyrin distortion in heme proteins: Differences between oxidoreductases and oxygen carrier proteins," Yusuke Kanematsu*, Hiroko X. Kondo, Yasuhiro Imada, and Yu Takano*, Chemical Physics Letters710, 108-112, 2018
    DOI: 10.1016/j.cplett.2018.08.071
  • "Zn2+-binding to the voltage-gated proton channel Hv1/VSOP," Masayo Iwaki, Kohei Takeshita, Hiroko X. Kondo, Kengo Kinoshita, Yasushi Okamura, Yu Takano, Atsushi Nakagawa, and Hideki Kandori*, The Journal of Physical Chemistry B122, 9076-9080, 2018
    DOI: 10.1021/acs.jpcb.8b04890
  • "アンキリンが生体膜に相互作用する構造基盤," 藤原 祐一郎, 近藤 寛子, 城田 松之, 木下 賢吾, 生物物理 (生物物理学会誌) 58(3), 152-154, 2018
  • "The evolutionary process of mammalian sex determination genes focusing on marsupial SRYs," Yukako Katsura, Hiroko X. Kondo, Janelle Ryan, Vincent Harley and Yoko Satta, BMC Evolutionary Biology, 18:3, 2018

2017

2016